This repo builds the vignette showing the BIRS Biointegration workshop for seqFISH+scRNAseq dataset by using the SpatialExperiment class for the seqFISH data storage and the SingleCellExperiment Bioconductor class for the scRNA-seq data storage. The objects are then combined into a MultiAssayExperiment Bioconductor class object, retrieved through the SingleCellMultiModal Bioconductor package.
The vignette is available at: https://drighelli.github.io/BIRSBIO2020.seqFISH.SpatialAnalysis/articles/seqFISH.html